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Dmytro Kozakov

    20052026

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    • A Customizable Antibody Delivery Strategy Using Fc-Affinity Ligands

      Isaacs-Bernal, D., Bahsoun, N. E., Huo, L., Poda, G., Kozakov, D. & Shoichet, M. S., Apr 13 2026, In: ACS Biomaterials Science and Engineering. 12, 4, p. 2228-2242 15 p.

      Research output: Contribution to journal › Article › peer-review

    • Bias in the AlphaFold3 prediction of ligand-induced domain motion in enzymes

      Yu, H., Bekar-Cesaretli, A. A., Lazou, M., Kozakov, D., Joseph-McCarthy, D. & Vajda, S., Mar 10 2026, In: Proceedings of the National Academy of Sciences of the United States of America. 123, 10, e2530709123.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations

    • CACHE Challenge #3: Targeting the Nsp3 Macrodomain of SARS-CoV-2

      Herasymenko, O., Silva, M., Correy, G. J., Abu-Saleh, A. A. A. A., Ackloo, S., Arrowsmith, C., Ashworth, A., Ban, F., Beck, H., Bishop, K. P., Bohórquez, H. J., Bolotokova, A., Breznik, M., Chau, I., Chen, Y., Cherkasov, A., Dehaen, W., Della Corte, D., Denzinger, K. & Doering, N. P. & 63 others, Edfeldt, K., Edwards, A., Fayne, D., Gentile, F., Gibson, E., Gokdemir, O., Gunnarsson, A., Günther, J., Irwin, J. J., Jensen, J. H., Harding, R. J., Hillisch, A., Hoffer, L., Hogner, A., Hutchinson, A., Kandwal, S., Karlova, A., Koirala, K., Kotelnikov, S., Kozakov, D., Lee, J., Lee, S., Lessel, U., Liu, S., Liu, X., Loppnau, P., Meiler, J., Moretti, R., Moroz, Y. S., Muvva, C., Oprea, T. I., Paige, B., Pandit, A., Park, K., Poda, G., Protopopov, M. V., Pütter, V., Ravichandran, R., Rognan, D., Rosta, E., Sabnis, Y., Scott, T., Seitova, A., Sharma, P., Sindt, F., Song, M., Steinmann, C., Stevens, R., Talagayev, V., Tararina, V. V., Tarkhanova, O., Tingey, D., Trant, J. F., Treleaven, D., Tropsha, A., Walters, P., Wells, J., Westermaier, Y., Wolber, G., Wortmann, L., Zheng, S., Fraser, J. S. & Schapira, M., Feb 9 2026, In: Journal of Chemical Information and Modeling. 66, 3, p. 1566-1581 16 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1 Scopus citations

    • Modeling Protein–Protein and Protein–Ligand Interactions by the ClusPro Team in CASP16

      Ashizawa, R., Kotelnikov, S., Khan, O., Li, S. X., Glukhov, E., Cao, X., Lazou, M., Bekar-Cesaretli, A., Hailegeorgis, D., Averkava, V., Zhu, Y., Jones, G., Yu, H., Kalitin, D., Stepanenko, D., Koirala, K., Patsahan, T., Beglov, D., Lukin, M. & Joseph-McCarthy, D. & 7 others, Simmerling, C., Tropsha, A., Coutsias, E., Dill, K. A., Padhorny, D., Vajda, S. & Kozakov, D., Jan 2026, In: Proteins: Structure, Function and Bioinformatics. 94, 1, p. 183-191 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      9 Scopus citations

    • Conventional and non-conventional antigen-binding sites promote the development and function of chronic lymphocytic leukemia stereotyped subset #4 clones

      Liu, Y., Padhorny, D., Catera, R., Nicolo, A., Yan, X. J., Li, S. X., Iatrou, A., Mazzarello, A. N., Destefani, N., Allen, S. L., Kolitz, J. E., Rai, K. R., Degano, M., Ghia, P. P., Chu, C. C., Krammer, F., Jumaa, H., Stamatopoulos, K., Kozakov, D. & Chiorazzi, N., 2025, In: Frontiers in Immunology. 16, 1607189.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1 Scopus citations
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