Skip to main navigation Skip to search Skip to main content
Maria Nagan

View Scopus Profile

Maria Nagan

    1999 …2026

    Research activity per year

    Personal profile

    Fingerprint

    Dive into the research topics where Maria Nagan is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
    • 1 Similar Profiles
    View full fingerprint

    Collaborations and top research areas from the last five years

    Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
    Explore network further

    • Deciphering hydration patterns across RNA conformations: Insights into water-mediated RNA recognition

      Ghosh, A. P., DuVal, J. N., Cavoto, A. M. & Nagan, M. C., Jun 2026, In: Current Research in Structural Biology. 11, 100184.

      Research output: Contribution to journal › Article › peer-review

      Open Access

    • Recent Developments in Amber Biomolecular Simulations

      Case, D. A., Cerutti, D. S., Cruzeiro, V. W. D., Darden, T. A., Duke, R. E., Ghazimirsaeed, M., Giambaşu, G. M., Giese, T. J., Götz, A. W., Harris, J. A., Kasavajhala, K., Lee, T. S., Li, Z., Lin, C., Liu, J., Miao, Y., Salomon-Ferrrer, R., Shen, J., Snyder, R. & Swails, J. & 11 others, Walker, R. C., Wang, J., Wu, X., Zeng, J., Cheatham, T. E., Roe, D. R., Roitberg, A., Simmerling, C., York, D. M., Nagan, M. C. & Merz, K. M., Aug 11 2025, In: Journal of Chemical Information and Modeling. 65, 15, p. 7835-7843 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      148 Scopus citations

    • Accurately Modeling RNA Stem-Loops in an Implicit Solvent Environment

      Linzer, J. T., Aminov, E., Abdullah, A. S., Kirkup, C. E., Diaz Ventura, R. I., Bijoor, V. R., Jung, J., Huang, S., Tse, C. G., Álvarez Toucet, E., Onghai, H. P., Ghosh, A. P., Grodzki, A. C., Haines, E. R., Iyer, A. S., Khalil, M. K., Leong, A. P., Neuhaus, M. A., Park, J. & Shahid, A. & 4 others, Xie, M., Ziembicki, J. M., Simmerling, C. & Nagan, M. C., Aug 12 2024, In: Journal of Chemical Information and Modeling. 64, 15, p. 6092-6104 13 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      3 Scopus citations

    • Adjusting the Energy Profile for CH-O Interactions Leads to Improved Stability of RNA Stem-Loop Structures in MD Simulations

      Raguette, L. E., Gunasekera, S. S., Diaz Ventura, R. I., Aminov, E., Linzer, J. T., Parwana, D., Wu, Q., Simmerling, C. & Nagan, M. C., Aug 22 2024, In: Journal of Physical Chemistry B. 128, 33, p. 7921-7933 13 p.

      Research output: Contribution to journal › Article › peer-review

      8 Scopus citations

    • AmberTools

      Case, D. A., Aktulga, H. M., Belfon, K., Cerutti, D. S., Cisneros, G. A., Cruzeiro, V. W. D., Forouzesh, N., Giese, T. J., Götz, A. W., Gohlke, H., Izadi, S., Kasavajhala, K., Kaymak, M. C., King, E., Kurtzman, T., Lee, T. S., Li, P., Liu, J., Luchko, T. & Luo, R. & 27 others, Manathunga, M., Machado, M. R., Nguyen, H. M., O’Hearn, K. A., Onufriev, A. V., Pan, F., Pantano, S., Qi, R., Rahnamoun, A., Risheh, A., Schott-Verdugo, S., Shajan, A., Swails, J., Wang, J., Wei, H., Wu, X., Wu, Y., Zhang, S., Zhao, S., Zhu, Q., Cheatham, T. E., Roe, D. R., Roitberg, A., Simmerling, C., York, D. M., Nagan, M. C. & Merz, K. M., Oct 23 2023, In: Journal of Chemical Information and Modeling. 63, 20, p. 6183-6191 9 p.

      Research output: Contribution to journal › Article › peer-review

      Open Access
      1802 Scopus citations
    View all 19 Research outputs