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At the roots of dictionary compression: String attractors

  • Technical University of Denmark
  • University of Pisa

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

94 Scopus citations

Abstract

A well-known fact in the field of lossless text compression is that high-order entropy is a weak model when the input contains long repetitions. Motivated by this fact, decades of research have generated myriads of so-called dictionary compressors: algorithms able to reduce the text’s size by exploiting its repetitiveness. Lempel-Ziv 77 is one of the most successful and well-known tools of this kind, followed by straight-line programs, run-length Burrows-Wheeler transform, macro schemes, collage systems, and the compact directed acyclic word graph. In this paper, we show that these techniques are different solutions to the same, elegant, combinatorial problem: to find a small set of positions capturing all distinct text’s substrings. We call such a set a string attractor. We first show reductions between dictionary compressors and string attractors. This gives the approximation ratios of dictionary compressors with respect to the smallest string attractor and allows us to uncover new asymptotic relations between the output sizes of different dictionary compressors. We then show that the k-attractor problem —deciding whether a text has a size-t set of positions capturing all substrings of length at most k — is NP-complete for k ≥ 3. This, in particular, includes the full string attractor problem. We provide several approximation techniques for the smallest k-attractor, show that the problem is APX-complete for constant k, and give strong inapproximability results. To conclude, we provide matching lower and upper bounds for the random access problem on string attractors. The upper bound is proved by showing a data structure supporting queries in optimal time. Our data structure is universal: by our reductions to string attractors, it supports random access on any dictionary-compression scheme. In particular, it matches the lower bound also on LZ77, straight-line programs, collage systems, and macro schemes, and therefore essentially closes (at once) the random access problem for all these compressors.

Original languageEnglish
Title of host publicationSTOC 2018 - Proceedings of the 50th Annual ACM SIGACT Symposium on Theory of Computing
EditorsMonika Henzinger, David Kempe, Ilias Diakonikolas
PublisherAssociation for Computing Machinery
Pages228-238
Number of pages11
ISBN (Electronic)9781450355599
DOIs
StatePublished - Jun 20 2018
Event50th Annual ACM Symposium on Theory of Computing, STOC 2018 - Los Angeles, United States
Duration: Jun 25 2018Jun 29 2018

Publication series

NameProceedings of the Annual ACM Symposium on Theory of Computing
ISSN (Print)0737-8017

Conference

Conference50th Annual ACM Symposium on Theory of Computing, STOC 2018
Country/TerritoryUnited States
CityLos Angeles
Period06/25/1806/29/18

Keywords

  • Compressed data structures
  • Dictionary compression

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