TY - GEN
T1 - At the roots of dictionary compression
T2 - 50th Annual ACM Symposium on Theory of Computing, STOC 2018
AU - Kempa, Dominik
AU - Prezza, Nicola
N1 - Publisher Copyright:
© 2018 Association for Computing Machinery.
PY - 2018/6/20
Y1 - 2018/6/20
N2 - A well-known fact in the field of lossless text compression is that high-order entropy is a weak model when the input contains long repetitions. Motivated by this fact, decades of research have generated myriads of so-called dictionary compressors: algorithms able to reduce the text’s size by exploiting its repetitiveness. Lempel-Ziv 77 is one of the most successful and well-known tools of this kind, followed by straight-line programs, run-length Burrows-Wheeler transform, macro schemes, collage systems, and the compact directed acyclic word graph. In this paper, we show that these techniques are different solutions to the same, elegant, combinatorial problem: to find a small set of positions capturing all distinct text’s substrings. We call such a set a string attractor. We first show reductions between dictionary compressors and string attractors. This gives the approximation ratios of dictionary compressors with respect to the smallest string attractor and allows us to uncover new asymptotic relations between the output sizes of different dictionary compressors. We then show that the k-attractor problem —deciding whether a text has a size-t set of positions capturing all substrings of length at most k — is NP-complete for k ≥ 3. This, in particular, includes the full string attractor problem. We provide several approximation techniques for the smallest k-attractor, show that the problem is APX-complete for constant k, and give strong inapproximability results. To conclude, we provide matching lower and upper bounds for the random access problem on string attractors. The upper bound is proved by showing a data structure supporting queries in optimal time. Our data structure is universal: by our reductions to string attractors, it supports random access on any dictionary-compression scheme. In particular, it matches the lower bound also on LZ77, straight-line programs, collage systems, and macro schemes, and therefore essentially closes (at once) the random access problem for all these compressors.
AB - A well-known fact in the field of lossless text compression is that high-order entropy is a weak model when the input contains long repetitions. Motivated by this fact, decades of research have generated myriads of so-called dictionary compressors: algorithms able to reduce the text’s size by exploiting its repetitiveness. Lempel-Ziv 77 is one of the most successful and well-known tools of this kind, followed by straight-line programs, run-length Burrows-Wheeler transform, macro schemes, collage systems, and the compact directed acyclic word graph. In this paper, we show that these techniques are different solutions to the same, elegant, combinatorial problem: to find a small set of positions capturing all distinct text’s substrings. We call such a set a string attractor. We first show reductions between dictionary compressors and string attractors. This gives the approximation ratios of dictionary compressors with respect to the smallest string attractor and allows us to uncover new asymptotic relations between the output sizes of different dictionary compressors. We then show that the k-attractor problem —deciding whether a text has a size-t set of positions capturing all substrings of length at most k — is NP-complete for k ≥ 3. This, in particular, includes the full string attractor problem. We provide several approximation techniques for the smallest k-attractor, show that the problem is APX-complete for constant k, and give strong inapproximability results. To conclude, we provide matching lower and upper bounds for the random access problem on string attractors. The upper bound is proved by showing a data structure supporting queries in optimal time. Our data structure is universal: by our reductions to string attractors, it supports random access on any dictionary-compression scheme. In particular, it matches the lower bound also on LZ77, straight-line programs, collage systems, and macro schemes, and therefore essentially closes (at once) the random access problem for all these compressors.
KW - Compressed data structures
KW - Dictionary compression
UR - https://www.scopus.com/pages/publications/85049909107
U2 - 10.1145/3188745.3188814
DO - 10.1145/3188745.3188814
M3 - Conference contribution
AN - SCOPUS:85049909107
T3 - Proceedings of the Annual ACM Symposium on Theory of Computing
SP - 228
EP - 238
BT - STOC 2018 - Proceedings of the 50th Annual ACM SIGACT Symposium on Theory of Computing
A2 - Henzinger, Monika
A2 - Kempe, David
A2 - Diakonikolas, Ilias
PB - Association for Computing Machinery
Y2 - 25 June 2018 through 29 June 2018
ER -