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Hierarchical nucleus segmentation in digital pathology images

  • Stony Brook University

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

17 Scopus citations

Abstract

Extracting nuclei is one of the most actively studied topic in the digital pathology researches. Most of the studies directly search the nuclei (or seeds for the nuclei) from the finest resolution available. While the richest information has been utilized by such approaches, it is sometimes difficult to address the heterogeneity of nuclei in different tissues. In this work, we propose a hierarchical approach which starts from the lower resolution level and adaptively adjusts the parameters while progressing into finer and finer resolution. The algorithm is tested on brain and lung cancers images from The Cancer Genome Atlas data set.

Original languageEnglish
Title of host publicationMedical Imaging 2016
Subtitle of host publicationDigital Pathology
EditorsAnant Madabhushi, Metin N. Gurcan
PublisherSPIE
ISBN (Electronic)9781510600263
DOIs
StatePublished - 2016
Event4th Medical Imaging 2016: Digital Pathology - San Diego, United States
Duration: Mar 2 2016Mar 3 2016

Publication series

NameProgress in Biomedical Optics and Imaging - Proceedings of SPIE
Volume9791
ISSN (Print)1605-7422

Conference

Conference4th Medical Imaging 2016: Digital Pathology
Country/TerritoryUnited States
CitySan Diego
Period03/2/1603/3/16

Keywords

  • digital pathology
  • nucleus segmentation

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