Abstract
High throughput profiling of multiomics data provides a valuable resource to better understand the complex human disease such as cancer and to potentially uncover new subtypes. Integrative clustering has emerged as a powerful unsupervised learning framework for subtype discovery. In this paper, we propose an efficient weighted integrative clustering called intCC by combining ensemble method, consensus clustering and kernel learning integrative clustering. We illustrate that intCC can accurately uncover the latent cluster structures via extensive simulation studies and a case study on the TCGA pan cancer datasets. An R package intCC implementing our proposed method is available at https://github.com/candsj/intCC.
| Original language | English |
|---|---|
| Title of host publication | Pacific Symposium on Biocomputing 2024, PSB 2024 |
| Editors | Russ B. Altman, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein |
| Publisher | World Scientific |
| Pages | 627-640 |
| Number of pages | 14 |
| Edition | 2024 |
| ISBN (Electronic) | 9789811286414 |
| DOIs | |
| State | Published - 2024 |
| Event | 29th Pacific Symposium on Biocomputing, PSB 2024 - Kohala Coast, United States Duration: Jan 3 2024 → Jan 7 2024 |
Conference
| Conference | 29th Pacific Symposium on Biocomputing, PSB 2024 |
|---|---|
| Country/Territory | United States |
| City | Kohala Coast |
| Period | 01/3/24 → 01/7/24 |
Keywords
- Consensus clustering
- Ensemble learning
- Integrative clustering
- Multiomics data
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