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IntCC: An e_cient weighted integrative consensus clustering of multimodal data

  • Stony Brook University

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

2 Scopus citations

Abstract

High throughput profiling of multiomics data provides a valuable resource to better understand the complex human disease such as cancer and to potentially uncover new subtypes. Integrative clustering has emerged as a powerful unsupervised learning framework for subtype discovery. In this paper, we propose an efficient weighted integrative clustering called intCC by combining ensemble method, consensus clustering and kernel learning integrative clustering. We illustrate that intCC can accurately uncover the latent cluster structures via extensive simulation studies and a case study on the TCGA pan cancer datasets. An R package intCC implementing our proposed method is available at https://github.com/candsj/intCC.

Original languageEnglish
Title of host publicationPacific Symposium on Biocomputing 2024, PSB 2024
EditorsRuss B. Altman, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein
PublisherWorld Scientific
Pages627-640
Number of pages14
Edition2024
ISBN (Electronic)9789811286414
DOIs
StatePublished - 2024
Event29th Pacific Symposium on Biocomputing, PSB 2024 - Kohala Coast, United States
Duration: Jan 3 2024Jan 7 2024

Conference

Conference29th Pacific Symposium on Biocomputing, PSB 2024
Country/TerritoryUnited States
CityKohala Coast
Period01/3/2401/7/24

Keywords

  • Consensus clustering
  • Ensemble learning
  • Integrative clustering
  • Multiomics data

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