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Modeling and simulation of cardiac tissue using hybrid I/O automata

  • E. Bartocci
  • , F. Corradini
  • , M. R. Di Berardini
  • , E. Entcheva
  • , S. A. Smolka
  • , R. Grosu
  • University of Camerino
  • Stony Brook University

Research output: Contribution to journalArticlepeer-review

26 Scopus citations

Abstract

We propose a new biological framework based on the Lynch et al. theory of Hybrid I/O Automata (HIOAs) for modeling and simulating excitable tissue. Within this framework, we view an excitable tissue as a composition of two main kinds of component: a diffusion medium and a collection of cells, both modeled as an HIOA. This approach yields a notion of decomposition that allows us to describe a tissue as the parallel composition of several interacting tissues, a property that could be exploited to parallelize, and hence improve, the efficiency of the simulation process. We also demonstrate the feasibility of our HIOA-based framework to capture and mimic different kinds of wave-propagation behavior in 2D isotropic cardiac tissue, including normal wave propagation along the tissue; the creation of spiral waves; the break-up of spiral waves into more complex patterns such as fibrillation; and the recovery of the tissue to the rest via electrical defibrillation.

Original languageEnglish
Pages (from-to)3149-3165
Number of pages17
JournalTheoretical Computer Science
Volume410
Issue number33-34
DOIs
StatePublished - Aug 21 2009

Keywords

  • Computational systems biology
  • Excitable tissue
  • Formal analysis
  • Hybrid automata

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