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Quantitative regular expressions for arrhythmia detection algorithms

  • University of Pennsylvania
  • TU Wien

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

13 Scopus citations

Abstract

Motivated by the problem of verifying the correctness of arrhythmia-detection algorithms, we present a formalization of these algorithms in the language of Quantitative Regular Expressions. QREs are a flexible formal language for specifying complex numerical queries over data streams, with provable runtime and memory consumption guarantees. The medical-device algorithms of interest include peak detection (where a peak in a cardiac signal indicates a heartbeat) and various discriminators, each of which uses a feature of the cardiac signal to distinguish fatal from non-fatal arrhythmias. Expressing these algorithms’ desired output in current temporal logics, and implementing them via monitor synthesis, is cumbersome, error-prone, computationally expensive, and sometimes infeasible. In contrast, we show that a range of peak detectors (in both the time and wavelet domains) and various discriminators at the heart of today’s arrhythmia-detection devices are easily expressible in QREs. The fact that one formalism (QREs) is used to describe the desired end-to-end operation of an arrhythmia detector opens the way to formal analysis and rigorous testing of these detectors’ correctness and performance. Such analysis could alleviate the regulatory burden on device developers when modifying their algorithms. The performance of the peak-detection QREs is demonstrated by running them on real patient data, on which they yield results on par with those provided by a cardiologist.

Original languageEnglish
Title of host publicationComputational Methods in Systems Biology - 15th International Conference, CMSB 2017, Proceedings
EditorsJerome Feret, Heinz Koeppl
PublisherSpringer Verlag
Pages23-39
Number of pages17
ISBN (Print)9783319674704
DOIs
StatePublished - 2017
Event15th International Conference on Computational Methods in Systems Biology, CMSB 2017 - Darmstadt, Germany
Duration: Sep 27 2017Sep 29 2017

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume10545 LNBI
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference15th International Conference on Computational Methods in Systems Biology, CMSB 2017
Country/TerritoryGermany
CityDarmstadt
Period09/27/1709/29/17

Keywords

  • Arrythmia discrimination
  • Electrocardiograms
  • ICDs
  • Peak Detection
  • Quantitative Regular Expressions

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