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SHREC'17 track: Protein shape retrieval

  • Na Song
  • , Daniela Craciun
  • , Charles W. Christoffer
  • , Xusi Han
  • , Daisuke Kihara
  • , Guillaume Levieux
  • , Matthieu Montes
  • , Hong Qin
  • , Pranjal Sahu
  • , Genki Terashi
  • , Haiguang Liu
  • China Academy of Engineering Physics
  • Conservatoire national des arts et métiers
  • Purdue University
  • Stony Brook University

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

5 Scopus citations

Abstract

The large number of protein structures deposited in the protein database provide an opportunity to examine the structure relations using computational algorithms, which can be used to classify the structures based on shape similarity. In this paper, we report the result of the SHREC 2017 track on shape retrievals from protein database. The goal of this track is to test the performance of the algorithms proposed by participants for the retrieval of bioshape (proteins). The test set is composed of 5,854 abstracted shapes from actual protein structures after removing model redundancy. Ten query shapes were selected from a set of representative molecules that have important biological functions. Six methods from four teams were evaluated and the performance is summarized in this report, in which both the retrieval accuracy and computational speed were compared. The biological relevance of the shape retrieval approaches is discussed. We also discussed the future perspectives of shape retrieval for biological molecular models.

Original languageEnglish
Title of host publicationEG 3DOR 2017 - Eurographics 2017 Workshop on 3D Object Retrieval
EditorsFlorent Dupont, Ioannis Pratikakis, Maks Ovsjanikov
PublisherEurographics Association
Pages67-74
Number of pages8
ISBN (Electronic)9783038680307
DOIs
StatePublished - 2017
Event10th Eurographics Workshop on 3D Object Retrieval, 3DOR 2017 - Lyon, France
Duration: Apr 23 2017Apr 24 2017

Publication series

NameEurographics Workshop on 3D Object Retrieval, EG 3DOR
Volume2017-April
ISSN (Print)1997-0463
ISSN (Electronic)1997-0471

Conference

Conference10th Eurographics Workshop on 3D Object Retrieval, 3DOR 2017
Country/TerritoryFrance
CityLyon
Period04/23/1704/24/17

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