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Transcriptional drift in aging cells: A global decontroller

  • Stony Brook University
  • Memorial Sloan-Kettering Cancer Center
  • InVitro Cell Research

Research output: Contribution to journalArticlepeer-review

3 Scopus citations

Abstract

As cells age, they undergo a remarkable global change: In transcriptional drift, hundreds of genes become overexpressed while hundreds of others become underexpressed. Using archetype modeling and Gene Ontology analysis on data from aging Caenorhabditis elegans worms, we find that the up-regulated genes code for sensory proteins upstream of stress responses and down-regulated genes are growth- and metabolism-related. We observe similar trends within human fibroblasts, suggesting that this process is conserved in higher organisms. We propose a simple mechanistic model for how such global coordination of multiprotein expression levels may be achieved by the binding of a single factor that concentrates with age in C. elegans. A key implication is that a cell’s own responses are part of its aging process, so unlike wear-and-tear processes, intervention might be able to modulate these effects.

Original languageEnglish
Article numbere2401830121
JournalProceedings of the National Academy of Sciences of the United States of America
Volume121
Issue number30
DOIs
StatePublished - Jul 23 2024

Keywords

  • aging
  • archetype analysis
  • transcriptional drift

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