Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images

Yunxiang Mao; Zhaozheng Yin

doi:10.1007/978-3-319-66185-8_7

Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images

Yunxiang Mao
, Zhaozheng Yin

Biomedical Informatics

Missouri University of Science and Technology

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

13 Scopus citations

Abstract

In this paper, we propose a Two-Stream Bidirectional Long Short-Term Memory (TS-BLSTM) for the task of mitosis event detection and stage localization in time-lapse phase contrast microscopy image sequences. Our method consists of two steps. First, we extract candidate mitosis image sequences. Then, we solve the problem of mitosis event detection and stage localization jointly by the proposed TS-BLSTM, which utilizes both appearance and motion information from candidate sequences. The proposed method outperforms state-of-the-arts by achieving 98.4% precision and 97.0% recall for mitosis detection and 0.62 frame error on average for mitosis stage localization in five challenging image sequences.

Original language	English
Title of host publication	Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings
Editors	Pierre Jannin, Simon Duchesne, Maxime Descoteaux, Alfred Franz, D. Louis Collins, Lena Maier-Hein
Publisher	Springer Verlag
Pages	56-64
Number of pages	9
ISBN (Print)	9783319661841
DOIs	https://doi.org/10.1007/978-3-319-66185-8_7
State	Published - 2017
Event	20th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2017 - Quebec City, Canada Duration: Sep 11 2017 → Sep 13 2017

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	10434 LNCS
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	20th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2017
Country/Territory	Canada
City	Quebec City
Period	09/11/17 → 09/13/17

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10.1007/978-3-319-66185-8_7

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Mao, Y., & Yin, Z. (2017). Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images. In P. Jannin, S. Duchesne, M. Descoteaux, A. Franz, D. L. Collins, & L. Maier-Hein (Eds.), Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings (pp. 56-64). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 10434 LNCS). Springer Verlag. https://doi.org/10.1007/978-3-319-66185-8_7

Mao, Yunxiang ; Yin, Zhaozheng. / Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images. Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. editor / Pierre Jannin ; Simon Duchesne ; Maxime Descoteaux ; Alfred Franz ; D. Louis Collins ; Lena Maier-Hein. Springer Verlag, 2017. pp. 56-64 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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title = "Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images",

abstract = "In this paper, we propose a Two-Stream Bidirectional Long Short-Term Memory (TS-BLSTM) for the task of mitosis event detection and stage localization in time-lapse phase contrast microscopy image sequences. Our method consists of two steps. First, we extract candidate mitosis image sequences. Then, we solve the problem of mitosis event detection and stage localization jointly by the proposed TS-BLSTM, which utilizes both appearance and motion information from candidate sequences. The proposed method outperforms state-of-the-arts by achieving 98.4\% precision and 97.0\% recall for mitosis detection and 0.62 frame error on average for mitosis stage localization in five challenging image sequences.",

author = "Yunxiang Mao and Zhaozheng Yin",

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year = "2017",

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Mao, Y & Yin, Z 2017, Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images. in P Jannin, S Duchesne, M Descoteaux, A Franz, DL Collins & L Maier-Hein (eds), Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 10434 LNCS, Springer Verlag, pp. 56-64, 20th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2017, Quebec City, Canada, 09/11/17. https://doi.org/10.1007/978-3-319-66185-8_7

Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images. / Mao, Yunxiang; Yin, Zhaozheng.
Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. ed. / Pierre Jannin; Simon Duchesne; Maxime Descoteaux; Alfred Franz; D. Louis Collins; Lena Maier-Hein. Springer Verlag, 2017. p. 56-64 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 10434 LNCS).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images

AU - Mao, Yunxiang

AU - Yin, Zhaozheng

N1 - Publisher Copyright: © Springer International Publishing AG 2017.

PY - 2017

Y1 - 2017

N2 - In this paper, we propose a Two-Stream Bidirectional Long Short-Term Memory (TS-BLSTM) for the task of mitosis event detection and stage localization in time-lapse phase contrast microscopy image sequences. Our method consists of two steps. First, we extract candidate mitosis image sequences. Then, we solve the problem of mitosis event detection and stage localization jointly by the proposed TS-BLSTM, which utilizes both appearance and motion information from candidate sequences. The proposed method outperforms state-of-the-arts by achieving 98.4% precision and 97.0% recall for mitosis detection and 0.62 frame error on average for mitosis stage localization in five challenging image sequences.

AB - In this paper, we propose a Two-Stream Bidirectional Long Short-Term Memory (TS-BLSTM) for the task of mitosis event detection and stage localization in time-lapse phase contrast microscopy image sequences. Our method consists of two steps. First, we extract candidate mitosis image sequences. Then, we solve the problem of mitosis event detection and stage localization jointly by the proposed TS-BLSTM, which utilizes both appearance and motion information from candidate sequences. The proposed method outperforms state-of-the-arts by achieving 98.4% precision and 97.0% recall for mitosis detection and 0.62 frame error on average for mitosis stage localization in five challenging image sequences.

UR - https://www.scopus.com/pages/publications/85029520397

U2 - 10.1007/978-3-319-66185-8_7

DO - 10.1007/978-3-319-66185-8_7

M3 - Conference contribution

AN - SCOPUS:85029520397

SN - 9783319661841

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 56

EP - 64

BT - Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings

A2 - Jannin, Pierre

A2 - Duchesne, Simon

A2 - Descoteaux, Maxime

A2 - Franz, Alfred

A2 - Collins, D. Louis

A2 - Maier-Hein, Lena

PB - Springer Verlag

T2 - 20th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2017

Y2 - 11 September 2017 through 13 September 2017

ER -

Mao Y, Yin Z. Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images. In Jannin P, Duchesne S, Descoteaux M, Franz A, Collins DL, Maier-Hein L, editors, Medical Image Computing and Computer Assisted Intervention − MICCAI 2017 - 20th International Conference, Proceedings. Springer Verlag. 2017. p. 56-64. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-319-66185-8_7

Two-stream bidirectional long short-term memory for mitosis event detection and stage localization in phase-contrast microscopy images

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