TY - GEN
T1 - Visual Attention Analysis Of Pathologists Examining Whole Slide Images Of Prostate Cancer
AU - Chakraborty, Souradeep
AU - Ma, Ke
AU - Gupta, Rajarsi
AU - Knudsen, Beatrice
AU - Zelinsky, Gregory J.
AU - Saltz, Joel H.
AU - Samaras, Dimitris
N1 - Publisher Copyright:
© 2022 IEEE.
PY - 2022
Y1 - 2022
N2 - We study the attention of pathologists as they examine whole-slide images (WSIs) of prostate cancer tissue using a digital microscope. To the best of our knowledge, our study is the first to report in detail how pathologists navigate WSIs of prostate cancer as they accumulate information for their diagnoses. We collected slide navigation data (i.e., viewport location, magnification level, and time) from 13 pathologists in 2 groups (5 genitourinary (GU) specialists and 8 general pathologists) and generated visual attention heatmaps and scanpaths. Each pathologist examined five WSIs from the TCGA PRAD dataset, which were selected by a GU pathology specialist. We examined and analyzed the distributions of visual attention for each group of pathologists after each WSI was examined. To quantify the relationship between a pathologist's attention and evidence for cancer in the WSI, we obtained tumor annotations from a genitourinary specialist. We used these annotations to compute the overlap between the distribution of visual attention and annotated tumor region to identify strong correlations. Motivated by this analysis, we trained a deep learning model to predict visual attention on unseen WSIs. We find that the attention heatmaps predicted by our model correlate quite well with the ground truth attention heatmap and tumor annotations on a test set of 17 WSIs by using various spatial and temporal evaluation metrics.
AB - We study the attention of pathologists as they examine whole-slide images (WSIs) of prostate cancer tissue using a digital microscope. To the best of our knowledge, our study is the first to report in detail how pathologists navigate WSIs of prostate cancer as they accumulate information for their diagnoses. We collected slide navigation data (i.e., viewport location, magnification level, and time) from 13 pathologists in 2 groups (5 genitourinary (GU) specialists and 8 general pathologists) and generated visual attention heatmaps and scanpaths. Each pathologist examined five WSIs from the TCGA PRAD dataset, which were selected by a GU pathology specialist. We examined and analyzed the distributions of visual attention for each group of pathologists after each WSI was examined. To quantify the relationship between a pathologist's attention and evidence for cancer in the WSI, we obtained tumor annotations from a genitourinary specialist. We used these annotations to compute the overlap between the distribution of visual attention and annotated tumor region to identify strong correlations. Motivated by this analysis, we trained a deep learning model to predict visual attention on unseen WSIs. We find that the attention heatmaps predicted by our model correlate quite well with the ground truth attention heatmap and tumor annotations on a test set of 17 WSIs by using various spatial and temporal evaluation metrics.
KW - Prostate cancer
KW - digital histopathology
KW - tumor segmentation
KW - visual attention
UR - https://www.scopus.com/pages/publications/85129640433
U2 - 10.1109/ISBI52829.2022.9761489
DO - 10.1109/ISBI52829.2022.9761489
M3 - Conference contribution
AN - SCOPUS:85129640433
T3 - Proceedings - International Symposium on Biomedical Imaging
BT - IEEE ISBI 2022 Proceedings - 2022 IEEE International Symposium on Biomedical Imaging
PB - IEEE Computer Society
T2 - 19th IEEE International Symposium on Biomedical Imaging, ISBI 2022
Y2 - 28 March 2022 through 31 March 2022
ER -